PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30084.m000185
Common NameRCOM_1361210
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 292aa    MW: 32548.6 Da    PI: 8.3084
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30084.m000185genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-183383155
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   +++ GVr+++ +g+WvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  30084.m000185 33 TKFVGVRQRP-SGKWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 83
                   699*******.7*********32...35**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.41E-323390No hitNo description
PfamPF008476.5E-133383IPR001471AP2/ERF domain
PROSITE profilePS5103219.7443491IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-193492IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.1E-283491IPR001471AP2/ERF domain
SMARTSM003801.5E-383497IPR001471AP2/ERF domain
PRINTSPR003675.2E-83546IPR001471AP2/ERF domain
PRINTSPR003675.2E-85773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
METQSKRQPK GVSPNKQSKF KERSTFNNFK TKTKFVGVRQ RPSGKWVAEI KDTTQKIRMW  60
LGTFETAEEA ARAYDEAACL LRGSNTRTNF TTHVPPNSPI SMKIRNLLNH KKNLKQNYPA  120
TATSETTVRA SMIVSGNRSD IISSDVFVPH SSTAGFHSGN AHFSSLLCIG AKQENQDTSD  180
DVYRPDLSSC TGGLEPSSSQ FYYSSWPLFP TGFDELPLIQ EGLELPKTVG MLPDATDHDL  240
EVAGVGRMKV ERQMSASLYA MNGVNEYLEN AYDPSEALWD LSTLTQLFCR KP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-143594363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015582636.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11
TrEMBLB9T1F00.0B9T1F0_RICCO; DNA binding protein, putative
STRINGPOPTR_0003s21090.11e-105(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-32related to AP2 11